PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049321001

Common Name

GSBRNA2T00049321001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 330aa MW: 36269.5 Da PI: 7.0938

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049321001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00037	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00049321001 150 YQCKTCDRTFPSFQALGGHRASH 172 9***********99999998887 PP
2	zf-C2H2	13.3	0.00025	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00049321001 194 HECGICGAEFTSGQALGGHMRRH 216 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.1E-9	149	216	No hit	No description
Pfam	PF13912	1.8E-12	149	174	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.388	150	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.4E-4	192	218	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.0E-11	193	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	194	216	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.93	194	218	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSVSPPI VEEEVSNVLD SKENDVANRK 60 KDGVITSSSS SASWSSNNNP TLKAEEDEED QDIANCLILL SQGHSFPQHN QQLKIPHQEI 120 NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF 180 YSNLDVKKSN NKVHECGICG AEFTSGQALG GHMRRHRGAV VVAAAPAPIV TVAAAAANTE 240 LSLSSMSYDQ ISEGQDHLVM PEAKKAKKMV VSLDLDLNLP APEDENRVNG LSLTLKQKHE 300 QEQEHQQTKQ REEQVSLVLS APTLVDCYY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049321001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130819.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A078FGT4	0.0	A0A078FGT4_BRANA; BnaA03g01240D protein
STRING	Bra005803.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-124	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]