PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049422001

Common Name

GSBRNA2T00049422001, LOC106368478

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 284aa MW: 32078.3 Da PI: 4.5013

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049422001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.2	2e-18	94	144	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++ AeIrdps+ r r++lg+f taeeAa +++a+ +++g+ GSBRNA2T00049422001 94 KYRGVRRRP-WGKFSAEIRDPSS---RSRVWLGTFETAEEAAMVYDRAAINFRGH 144 8******.******965...4***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.5E-12	94	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	94	151	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.55	94	151	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-29	94	150	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-35	94	157	IPR001471	AP2/ERF domain
CDD	cd00018	2.11E-30	94	150	No hit	No description
PRINTS	PR00367	1.3E-10	95	106	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	117	133	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MERRTRRVKF TEHHKVTPVP TKPSNDSPRV VRIAYTDPFA TDSSSDDEDH NVTVAPRVKR 60 YVEEIRFGET KSSSSSSRKA RKGGNDDVSA NPVKYRGVRR RPWGKFSAEI RDPSSRSRVW 120 LGTFETAEEA AMVYDRAAIN FRGHNAQTNF LTPPPPPPSS PVIDLETVSG CDSGSQSLRS 180 PTSVLRFNFN EKTEVEIEPI ELATEVEAAS LFPDPYSLPE LCLAGEYFWD SETPPEPLFL 240 DDEIEIRKPF VNPVIPKEEN EPEDFSFDLS EDSWDVDNFF END*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-20	95	150	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-20	95	150	6	62	ATERF1
3gcc_A	2e-20	95	150	6	62	ATERF1
5wx9_A	6e-20	84	150	4	71	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049422001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinins. {ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189358	0.0	AC189358.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044E18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013663898.1	0.0	ethylene-responsive transcription factor CRF6
Swissprot	Q9M374	1e-102	CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBL	A0A078FEJ1	0.0	A0A078FEJ1_BRANA; BnaA09g39350D protein
STRING	Bo8g096140.1	1e-172	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2578	25	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61630.1	9e-96	cytokinin response factor 6

Link Out ? help Back to Top
Entrez Gene	106368478

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]