PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049445001
Common NameGSBRNA2T00049445001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 280aa    MW: 32006.5 Da    PI: 9.496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049445001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13121169152
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          +r +h ++Er+RR+++N+ ++ Lr+llP++   + ++ + a+i+  A++Y k
  GSBRNA2T00049445001 121 QRINHIAVERNRRRQMNEHISSLRSLLPPS---YIQRGDQASIVGGAINYAK 169
                          699***************************...9****************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-16119188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-10119176No hitNo description
Gene3DG3DSA:4.10.280.109.6E-13120175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-9126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQDTVPFLQM LQSEEDPLPF TSFKELLSLQ NLQHHWELES YLSHNETNPV STSSMEVTRQ  60
ALSSQELPFS RQQDMTVPSS SSTPNSRRKR KTISNPPEVT RGKRKRRKTK PSKDIEEIEN  120
QRINHIAVER NRRRQMNEHI SSLRSLLPPS YIQRGDQASI VGGAINYAKV LEQVIQSLEL  180
QRRTKQSCGV ENRVTCVPRI EATLIQNHVN LKVECRKKQG QLLKGIVSLE KLRLTVLHLN  240
ISSLSCSSVS YCFNLKMEDD CKLESAEEIT KVAHQIFDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188107KRKTISNPPEVTRGKRKRRK
2102107KRKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.140550.0leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049445001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663924.10.0transcription factor bHLH67-like isoform X2
SwissprotQ700E41e-107BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A078FDI60.0A0A078FDI6_BRANA; BnaA09g39520D protein
TrEMBLA0A397Y7J10.0A0A397Y7J1_BRACM; Uncharacterized protein
STRINGBo8g097470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-107bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]