PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049567001
Common NameGSBRNA2T00049567001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10490.4 Da    PI: 10.5085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049567001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.33.1e-161153345
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         ie    ++  +skR++g+lKKAeE+ vLCd ++ +++fs+t k
  GSBRNA2T00049567001 11 IECPKEKSSKYSKRKKGLLKKAEEMAVLCDSDIILLVFSPTSK 53
                         6666777888*****************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.222161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-22180IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-23160IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-15323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-161054IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRKKIELKK IECPKEKSSK YSKRKKGLLK KAEEMAVLCD SDIILLVFSP TSKPNLFYPH  60
SRPLGRILER LSNMSEYERE ERRSYTKKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049567001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373042e-96AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117017.18e-57PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLA0A078FEV97e-56A0A078FEV9_BRANA; BnaA09g40550D protein
TrEMBLA0A3P5Y6V72e-55A0A3P5Y6V7_BRACM; Uncharacterized protein
STRINGBo8g098790.16e-52(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.13e-13AGAMOUS-like 33
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]