PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049914001

Common Name

GSBRNA2T00049914001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 160aa MW: 18828.7 Da PI: 9.2641

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049914001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	43.7	7.9e-14	13	64	6	57
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveK 57 lw+ +D +++L+G++++++++g + +d+d fy + k+ i++++sk+ql+e GSBRNA2T00049914001 13 LWNINDVLLILKGIVEYENERGFRYNSDWDIFYGYTKDLINIRFSKKQLMEE 64 8************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVRRRKQQKK YLLWNINDVL LILKGIVEYE NERGFRYNSD WDIFYGYTKD LINIRFSKKQ 60 LMEEDVPLVE QKRVNDTRMD KDKSEELGGM DEFDALQDAL EASTSFQSVG KTKQKMLFQD 120 LKTLGAQRRK ELAGEWKALL NEEMELHMKK LTLLTKASL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049914001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593965.1	2e-79	PREDICTED: uncharacterized protein LOC106302008 isoform X2
TrEMBL	A0A078FBE3	1e-111	A0A078FBE3_BRANA; BnaC06g13230D protein
STRING	Bo6g064760.1	2e-88	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-14	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]