PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049915001
Common NameGSBRNA2T00049915001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 289aa    MW: 32801.5 Da    PI: 10.3518
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049915001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57384.11.9e-2695180397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++r+w+eeDe+++L+Gl+d++a++g +p++++ +fy+f+ +si  k+sk+q+++Kir+LK Kf   ++k          +++ +++f ls
  GSBRNA2T00049915001  95 SSRIWNEEDELTVLKGLVDYQAQKGNEPKSNWADFYRFLGGSITGKFSKEQVLTKIRKLKAKFIASMQK---------GNTSKSEAFLLS 175
                          78*******************************************************************.........445666889999 PP

               DUF573  93 kkiWg 97 
                          k+iWg
  GSBRNA2T00049915001 176 KRIWG 180
                          99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-2096180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTREREMSMK LLYGFFLSLE PPNANLDEKK IRAYLHVRIA TMVNLDFPDG TSPPSHFLRS  60
RKSPRKNASK HSPPPEPATE HVTKKKKKKK TLASSSRIWN EEDELTVLKG LVDYQAQKGN  120
EPKSNWADFY RFLGGSITGK FSKEQVLTKI RKLKAKFIAS MQKGNTSKSE AFLLSKRIWG  180
LQNVSDQSAN HTKSGEEMAN HEPSNNEVTK ADFEGNDESW AVRDAFETMV SKGLSDYQKK  240
LQLGKLMNLG SGKRRELSDE WKELCAEEVK LNIKRFKFSA VLAEAAKW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.45720.0flower| leaf| microspore| microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia (PubMed:12535344, PubMed:18162594). Not detected in emerging or mature leaves (PubMed:12535344). Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots (PubMed:18162594). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:18162594}.
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049915001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638179e-37AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankCP0026889e-37CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668483.10.0GLABROUS1 enhancer-binding protein-like
RefseqXP_013699472.10.0GLABROUS1 enhancer-binding protein-like
RefseqXP_022551794.10.0GLABROUS1 enhancer-binding protein-like
RefseqXP_022560342.10.0GLABROUS1 enhancer-binding protein-like
SwissprotQ9ASZ16e-53STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBLA0A078FEM30.0A0A078FEM3_BRANA; BnaC06g13240D protein
STRINGBo6g064770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.13e-55DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Nietzsche M,Schießl I,Börnke F
    The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants.
    Front Plant Sci, 2014. 5: p. 54
    [PMID:24600465]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]