PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049955001
Common NameGSBRNA2T00049955001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 140aa    MW: 16444.8 Da    PI: 10.6899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049955001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.72.2e-23686279
                  NAM  2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk 79
                         p+GfrFhPtdee++ +yL++k ++g++++++e+i++vdiy+++Pw+Lp++ ++  ++  wyfF ++d+ky + krk ++t+
  GSBRNA2T00049955001  6 PVGFRFHPTDEEIIGYYLRAKnMDGNTTHVNEFINTVDIYSFDPWELPSNSSSirKDYVWYFFGRKDNKYVHTKRKVKTTN 86
                         89*****************99455566888889***************53333225559************9999988775 PP
2NAM21.85.2e-07921316099
                  NAM  60 fFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                           Fsk++ ky++g r++r+ +sg+Wk+tg + ++++ + ++
  GSBRNA2T00049955001  92 LFSKKKDKYNRGGRQSRKKSSGFWKKTGVTVNMINPTVQQ 131
                          69***************************99988864444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-24385IPR003441NAC domain
PROSITE profilePS5100526.65139IPR003441NAC domain
PfamPF023656.2E-146121IPR003441NAC domain
SuperFamilySSF1019418.5E-593122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MVNSHPVGFR FHPTDEEIIG YYLRAKNMDG NTTHVNEFIN TVDIYSFDPW ELPSNSSSIR  60
KDYVWYFFGR KDNKYVHTKR KVKTTNITEE PLFSKKKDKY NRGGRQSRKK SSGFWKKTGV  120
TVNMINPTVQ QPMTRKKKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049955001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482388.12e-38PREDICTED: NAC domain-containing protein 5-like isoform X2
SwissprotO819149e-35NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A078FEP54e-98A0A078FEP5_BRANA; BnaC03g58370D protein
TrEMBLA0A0D3BIK64e-98A0A0D3BIK6_BRAOL; Uncharacterized protein
STRINGBo3g143160.16e-99(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-37NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]