PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050007001
Common NameGSBRNA2T00050007001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 463aa    MW: 50683.2 Da    PI: 6.9113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050007001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.8e-053433811255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  GSBRNA2T00050007001 343 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 381
                          7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-11341394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-5341385No hitNo description
Gene3DG3DSA:4.10.280.102.0E-8345388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MCQASKKLRA TLINISSLIH IDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH  60
QWSPGGISLN CVSLSHNFNN EMLNTRDENN NNNNSTSECM SLSNIHNHSL IQQQDFPLQW  120
THNESSSHHH EGLHKIKEEL SSATTSDHQQ GMPRFTDMLN SPVITNYLKI NEHKDYTEKL  180
LLNTISSGFP INGDYSNSLP SSSSSSSPSS QSHRGSFSQI YPSVNISSLS ESQRISNIPR  240
PFDMNMQVLD GRLFEGNVLV PPLNSQEIRG NFTPFGLPFH HHLQQTLHHP SSSPSHQMEI  300
YSNEPQASEG KRHNFVMAPK AGETASKKPR VESRSSCPPF KVRKEKLGDR IAALQQLVSP  360
FGKTDTASVL MEAIGYIKFL QSQIETLSVP YMRASRNRPG KASQLGSIPQ EGDEEETRDL  420
RSRGLCLVPL SCMTYVTGDG GDGGGGVGSG FWPTPPGFGG GT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050007001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895550.0AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623171.10.0PREDICTED: transcription factor bHLH110 isoform X1
RefseqXP_013685328.10.0transcription factor bHLH110 isoform X1
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A078FFN50.0A0A078FFN5_BRANA; BnaC03g58040D protein
STRINGBo3g141780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]