PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050125001
Common NameGSBRNA2T00050125001, LOC106441269, LOC106441270
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 261aa    MW: 29113.9 Da    PI: 5.1904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050125001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.21.5e-2188138256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  GSBRNA2T00050125001  88 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDQAAYKLRGE 138
                          59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.82E-3587147No hitNo description
SMARTSM003801.1E-3888151IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2388146IPR016177DNA-binding domain
PROSITE profilePS5103223.32788145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-3388146IPR001471AP2/ERF domain
PRINTSPR003671.7E-1189100IPR001471AP2/ERF domain
PfamPF008474.0E-1589138IPR001471AP2/ERF domain
PRINTSPR003671.7E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAAIDMFNSS TDLSDPLKEE LMKALKPSLP PVPNTIFGFN QTAPLGLNQL TPYQIHQIQN  60
QLNQRRSTTI SNLSPKPVPM KNMTVHKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT  120
AEEAAMAYDQ AAYKLRGELA RLNFPHTRRE CGYGGGDGSF KPLHPSVEAK LEAICQSLVK  180
TEDLDLPCSE TELFLPPKTE YEENTFSDES QVGSSSPESG VTTAFLGFLD SGFDEIGSFV  240
LEKFPSVEID WDAISKLSES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2287145160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.209830.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050125001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411600.0AC241160.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH092L18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013738553.10.0ethylene-responsive transcription factor ERF060-like
RefseqXP_013738554.10.0ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-145ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A078H1F50.0A0A078H1F5_BRANA; BnaA03g54460D protein
TrEMBLA0A3P6AJP70.0A0A3P6AJP7_BRACM; Uncharacterized protein
STRINGBra017879.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-137ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]