PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050301001
Common NameGSBRNA2T00050301001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 267aa    MW: 29129.3 Da    PI: 8.212
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050301001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-067398126
                         --S---SGGGGTS--TTTT.T-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGd.rCkFaHg 26
                         +kt+lC++f++ G C+y + +C+FaH+
  GSBRNA2T00050301001 73 FKTKLCCNFRA-GSCPYAAsTCHFAHS 98
                         69*********.*****7527*****7 PP
2zf-CCCH40.83.6e-13168193126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  +G+C++G +C+FaHg
  GSBRNA2T00050301001 168 WKTRICNKWEMSGYCPFGTNCRFAHG 193
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1370105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.94E-571104IPR000571Zinc finger, CCCH-type
SMARTSM003560.00137299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66272100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314113141IPR000571Zinc finger, CCCH-type
SMARTSM003560.41113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-7113140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-8114140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-10165198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-16165197IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-8167194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61167195IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10168193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSHRRDPTTD AVHVIPTNDP PPENPFPSPV WAATEDDYSR LSAANNDDTE SPCKKTRGSP  60
SPSSSSEIGK AFFKTKLCCN FRAGSCPYAA STCHFAHSAE ELRRPTAGES VRPYKGRHCK  120
KFYSGEGCPY GESCTFLHDE ASRNRESFAV SLGHRGGGNV VVAASPNWKT RICNKWEMSG  180
YCPFGTNCRF AHGASELHRF GGGLVEEEEG KIGTSSTLDT KKTGQYSLAS PGVPSQRVSN  240
GVRVVRKWKG PDRISRVYGD WIDDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050301001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9535560.0EU953556.1 Zea mays clone 1434304 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514785.11e-168PREDICTED: zinc finger CCCH domain-containing protein 28 isoform X1
SwissprotQ5PP656e-95C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
SwissprotQ9LQM32e-94C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A078H4E60.0A0A078H4E6_BRANA; BnaA05g08590D protein
STRINGBra005342.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-86C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]