PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050349001
Common NameGSBRNA2T00050349001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27661.6 Da    PI: 9.7599
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050349001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-191762449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         e +s  +vt+skRr+g++KKA+EL++LC++e+ v++fs+  k++ +
  GSBRNA2T00050349001 17 EKDSDLHVTYSKRRQGLFKKASELCTLCGVEIGVLVFSPGRKVFSF 62
                         5677789********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-28665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.203666IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-24783IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-15828IPR002100Transcription factor, MADS-box
PfamPF003196.9E-221562IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MARSRKGRQK IQIVKMEKDS DLHVTYSKRR QGLFKKASEL CTLCGVEIGV LVFSPGRKVF  60
SFGNPDVRYV FNRFKSYDQN PFQLNEFGPS ATIRGLNSIL SQELVKLEKE QARRKILEKI  120
RIQREETDKW WEKPPSELNL RQNTCLISVL ENLRMNLGSP RFQQAMVPQN YCGGSNNNIV  180
GGGNTDPLDE RSMFENAFNY NPNMMIPNQG PTLGYNNIKP EVFDPIYNMN WPEYKHGPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050349001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747477.11e-176agamous-like MADS-box protein AGL62
TrEMBLA0A078H4H11e-177A0A078H4H1_BRANA; BnaA04g16540D protein
STRINGBo4g165540.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16574611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.18e-58M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]