PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050859001
Common NameGSBRNA2T00050859001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 355aa    MW: 40369.4 Da    PI: 4.7705
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050859001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.88.3e-141902932115
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          p+G+rF P+d+ + ++yLk+kv g+++++  +  e+ +i+++ P+dLp      e++w+ ++++ +    g+ + r    + W   g+d+
  GSBRNA2T00050859001 190 PAGCRFLPSDDMMANYYLKNKVLGQPMNARIIPGECpHIFSIPPRDLPGY--PIETKWHCYCRKPN----GQDP-R----SLWTRVGEDT 268
                          89***************************666667799**********33..34689*****9855....4444.3....47******** PP

                  NAM  91 evlskkgelvglkktLvfykgrapk 115
                          +v+  +g+ vg+k+t ++ ++++++
  GSBRNA2T00050859001 269 TVFGPQGNGVGIKRTYALTDQEKES 293
                          ***************9999655443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5113810.75137123IPR005491ENT domain
SMARTSM011912.3E-1137105IPR005491ENT domain
PfamPF037352.2E-133896IPR005491ENT domain
SuperFamilySSF1586391.19E-83898IPR005491ENT domain
SuperFamilySSF1019415.62E-17186332IPR003441NAC domain
PROSITE profilePS5100519.65189333IPR003441NAC domain
PfamPF023653.4E-7190314IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MADNKDLDSN PPAEDLTIRP LKKIEIAHES ESEPELKKQK LKELQRKAFY SVLHASKAEN  60
SALSHKKSQI IQRLMKEWKI DQETHVSVAE KIDNSEKNVT SSLNSVPESL IVKRIRARLH  120
DEDCLPSNKN MKLEELHKQA CEDVLNAFNA ESPTLSSVNP LLKSYANDSV STRRKGCVHV  180
LSSFSQGFYP AGCRFLPSDD MMANYYLKNK VLGQPMNARI IPGECPHIFS IPPRDLPGYP  240
IETKWHCYCR KPNGQDPRSL WTRVGEDTTV FGPQGNGVGI KRTYALTDQE KESDDISLPG  300
EIEPPREEWF IEEISLPPSV ADTDLVFCHV ILNKIEKEEE YEEEEEYDDD EEEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050859001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589340.10.0PREDICTED: uncharacterized protein LOC106297688
TrEMBLA0A078H2M30.0A0A078H2M3_BRANA; BnaC06g15990D protein
STRINGBo6g072200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.13e-43NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]