PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051193001
Common NameGSBRNA2T00051193001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 289aa    MW: 32688.8 Da    PI: 9.3778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051193001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-1655100147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W   Ed +l ++v  +G+ +W+ Ia++m+ gRt+k+c++rw++ 
  GSBRNA2T00051193001  55 RGHWRVSEDSQLTELVSVHGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 100
                          899*****************************.***********996 PP
2Myb_DNA-binding45.41.9e-14109151347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++ eE+e+l+ a+  +G++ W+ Ia+ ++ gRt++ +k++w+ +
  GSBRNA2T00051193001 109 VFSVEEEERLLAAHGAFGNK-WAMIAKIFN-GRTDNALKNHWHVL 151
                          699*****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.95450101IPR017930Myb domain
SMARTSM007172.6E-1354103IPR001005SANT/Myb domain
PfamPF002493.2E-1555100IPR001005SANT/Myb domain
SuperFamilySSF466899.73E-2755152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-2456108IPR009057Homeodomain-like
CDDcd001678.33E-125899No hitNo description
PROSITE profilePS5129424.161102156IPR017930Myb domain
SMARTSM007174.0E-12106154IPR001005SANT/Myb domain
PfamPF002497.2E-11108151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-18109156IPR009057Homeodomain-like
CDDcd001671.41E-8110152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDISFFQAYP FDLPCSRAFN GDGENNAVEF SNKRMMVKVS DESKKKQRGS RVCSRGHWRV  60
SEDSQLTELV SVHGPQNWNH IAEKMQGRTG KSCRLRWFNQ LDPRINKRVF SVEEEERLLA  120
AHGAFGNKWA MIAKIFNGRT DNALKNHWHV LMARKLRQRS SSYTRRFNGS AHKPNADHTS  180
FDISPGSVDD EEVNMEKNSW KILKEGTTNM KAQYPQEEYC SPRMPMHGHY STFSADSLAL  240
TLHVSIQEPS SSLSSLSLPS SSAEYTMVAT KPPAFIDFLG VGHQSLNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-28551564105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051193001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694054.10.0transcription factor MYB117-like
TrEMBLA0A078JHN80.0A0A078JHN8_BRANA; BnaCnng49340D protein
STRINGBo9g008750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-142myb domain protein 110
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]