PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00051488001

Common Name

GSBRNA2T00051488001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 154aa MW: 18024.4 Da PI: 10.8527

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00051488001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	69	7.4e-22	42	101	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 l r+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+ e+ GSBRNA2T00051488001 42 LSRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTFEN 101 78*****************************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-18	39	103	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-20	42	101	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-16	42	98	No hit	No description
CDD	cd14702	1.98E-15	44	94	No hit	No description
PROSITE profile	PS50217	12.358	44	104	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-11	44	98	No hit	No description
PROSITE pattern	PS00036	0	46	61	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MELTLKVGRV LLMVQVKEVM QTLKITLDLD NTTGRMHLES CLSRQRRKQS NRESARRSRL 60 RKQAECDELA QRAEVLNEEN ASLREEINKL RSQCEELTFE NTSLNSRTNF YHSLHLKALT 120 WTRTSKNHQT SLKNTSSSNN NNNTRRFFAN RWL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	46	RMHLESCLSRQRR
2	55	61	RRSRLRK
3	55	62	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22546	2e-31	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00051488001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353164	8e-36	AK353164.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-I15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022557789.1	2e-54	bZIP transcription factor 16-like
TrEMBL	A0A078H5N5	1e-104	A0A078H5N5_BRANA; BnaC04g44430D protein
STRING	Bo4g183320.1	7e-62	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM26839	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	5e-34	basic region/leucine zipper transcription factor 16

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]