PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00051639001

Common Name

GSBRNA2T00051639001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 473aa MW: 51564.8 Da PI: 6.5707

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00051639001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7.2e-29	69	122	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ GSBRNA2T00051639001 69 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 122 79*****************.******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.323	66	125	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-20	67	126	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-30	68	127	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	69	122	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-9	71	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
QHVVRKKRNE WNVSEHSGSV EETGQREDGD NNSSSANNEG SWRGSRKRKE EEVDEQGGDD 60 KEDTSSLKKP RVVWSVELHQ QFVAAVNQLG VDKAVPKKIL EMMNVPGLTR ENVASHLQKY 120 RIYLRRLGGV SQHQGNMNHS FMTGQDPSFG PLSTLNGFDL QALAAAGQLP AQSLAHLQAA 180 GLARPPSLTK PGMSVDQRSI FSFENPKIRH GQMMNSGGGG NKQMNLLHGQ QQLSGGRAVG 240 QNVQSSGMMM PVGGGPSMLQ QQQQVMLSSS VPRRSETSSS SRVLPAAATT QSVVFNNFSS 300 ELPRNSFPLA SAPGISVSYQ EEVNSSDAKG GAGFGNPSYD IFNDYPQQHN NNNDWDLQNI 360 GMVFNSHQDT TTASAAFSSS SSTQRQRAEH VQNHHQQQQL PSQSLNHMNG GGSVRVKSER 420 VAETVTCPPA TTLFQEQYNQ EDLMSALLKQ EGLPLVDNEF DFDGYSFDNI PV*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

QHVVRKKRNE WNVSEHSGSV EETGQREDGD NNSSSANNEG SWRGSRKRKE EEVDEQGGDD  60
KEDTSSLKKP RVVWSVELHQ QFVAAVNQLG VDKAVPKKIL EMMNVPGLTR ENVASHLQKY  120
RIYLRRLGGV SQHQGNMNHS FMTGQDPSFG PLSTLNGFDL QALAAAGQLP AQSLAHLQAA  180
GLARPPSLTK PGMSVDQRSI FSFENPKIRH GQMMNSGGGG NKQMNLLHGQ QQLSGGRAVG  240
QNVQSSGMMM PVGGGPSMLQ QQQQVMLSSS VPRRSETSSS SRVLPAAATT QSVVFNNFSS  300
ELPRNSFPLA SAPGISVSYQ EEVNSSDAKG GAGFGNPSYD IFNDYPQQHN NNNDWDLQNI  360
GMVFNSHQDT TTASAAFSSS SSTQRQRAEH VQNHHQQQQL PSQSLNHMNG GGSVRVKSER  420
VAETVTCPPA TTLFQEQYNQ EDLMSALLKQ EGLPLVDNEF DFDGYSFDNI PV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	4e-22	65	127	1	63	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21630	1e-130	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:15173562, ECO:0000269\|PubMed:9891419}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:15282545, ECO:0000269\|PubMed:16407152}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00051639001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189632	4e-40	AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
GenBank	AC232469	4e-40	AC232469.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026A07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601580.1	0.0	PREDICTED: two-component response regulator ARR2-like
Swissprot	Q9ZWJ9	0.0	ARR2_ARATH; Two-component response regulator ARR2
TrEMBL	A0A078H483	0.0	A0A078H483_BRANA; BnaA01g17750D protein (Fragment)
STRING	Bo1g055180.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2403	27	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	0.0	response regulator 2

Publications ? help Back to Top
Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Takahashi N,Umeda M Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Arnaud D, et al. Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Takatsuka H,Higaki T,Umeda M Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]