PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051728001
Common NameGSBRNA2T00051728001, LOC106376051
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 198aa    MW: 22238.5 Da    PI: 10.3021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051728001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C+ksF +   L  H+++H
  GSBRNA2T00051728001  4 HKCKLCSKSFCNGRALGGHMKSH 26
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66436IPR007087Zinc finger, C2H2
PfamPF139126.0E-6426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHKHKCKLCS KSFCNGRALG GHMKSHLVSS HTLTRKKLSD SVYSSSSSSE GKTLVYGLRE  60
NPRKSFRVFS QDPESSIVYN SDTETEPESV DPVRKRSRTA VSKNKKKKKR SKKMTRYISS  120
PEPASSVSDG SQEHDLAMCL MMLSRDSRKI ELVKKPVLEA EETKPEKRQF PELRRCVIDL  180
NLPPPQENDV VTVVSAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193109RKRSRTAVSKNKKKKKR
2104112KKKKKRSKK
3105112KKKKRSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.50420.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051728001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013671548.11e-142zinc finger protein ZAT9
TrEMBLA0A078H4E91e-140A0A078H4E9_BRANA; BnaA01g17100D protein
TrEMBLA0A398AN241e-140A0A398AN24_BRACM; Uncharacterized protein
STRINGBo00875s050.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.12e-84C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]