PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051947001
Common NameGSBRNA2T00051947001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 283aa    MW: 31931.8 Da    PI: 8.3584
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051947001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731231.5e-38105193297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +fqrlw+eeDei++LqG+idfk++tg sp+dd++a y+++kksisf+vsk+q+++K+r+LKkK+ +k+k        sf+k+hd+k++ l
  GSBRNA2T00051947001 105 AFQRLWTEEDEIAVLQGMIDFKNDTGNSPYDDTNAYYDYIKKSISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDHKSYRL 187
                          69**************************************************************998776.......************* PP

               DUF573  92 skkiWg 97 
                          ++ iWg
  GSBRNA2T00051947001 188 CNYIWG 193
                          *****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.1E-31106193IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTKKRDPLEN PPAASSSDDA SSSEEEELPV KAPSSSAAQQ ASDIDSGSET ETDSDTEQPP  60
NQRSGKAIVA SKKDKSGTKR PSEGTSRDTN SKRAKKIGED SKKPAFQRLW TEEDEIAVLQ  120
GMIDFKNDTG NSPYDDTNAY YDYIKKSISF EVSKNQFMDK LRSLKKKYMG KEKPSFTKPH  180
DHKSYRLCNY IWGPDGMVLV RADEKSDWFE NSFLVRGIAA FGVDEHYVKQ RWSLVPVETK  240
KRVEEKVKML RAKEIEFLLQ KAKILHEVTS MIAEASKNKP FE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.130564e-95microspore| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051947001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644102.10.0probable transcription factor At1g61730
SwissprotQ9SYA91e-102STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A078H4G50.0A0A078H4G5_BRANA; BnaA03g60680D protein
STRINGBra021317.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-88DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]