PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052195001
Common NameGSBRNA2T00052195001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 636aa    MW: 71923.3 Da    PI: 6.2918
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052195001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.4e-53141411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgk
  GSBRNA2T00052195001  14 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGK 102
                          699***************************.99***************6448899999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++s k+  +g+kktLvfy+grap+ge+t+W+mheyr+
  GSBRNA2T00052195001 103 DRTIKS-KKMIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 141
                          ******.9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-645164IPR003441NAC domain
PROSITE profilePS5100558.64814164IPR003441NAC domain
PfamPF023652.0E-2715140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MATETQATLS MESLPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP  60
GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV  120
FYRGRAPRGE RTNWIMHEYR ATDKDLDGTG PGQSPYVLCR LFHKPSDVAN CDEVENVNAT  180
PTTTRCSRED NSSEMVQETA TSRVHAQNIS DDTERCPSDK GSDVKPDAPV IKTENHGETS  240
RAKDRGKSIV EESPFARDFS SLYGPSFDQT SYTPVPSSIG FPASHMDSMY SSDFGNCHYG  300
LHFQDGAAIQ DESLADVLDE VFHNHNQSST EPKDFALPKM MHWSFPRDTF GFVNGSAEAS  360
FPQFAPDVGA SRLASDHYVD SKEAVEIQSS SGSSRTVTPL HSNVLGQHPP VSYATMDPFN  420
SNVNQPEQEQ LPVDRNIILS EFNARARETQ TDLDFVVNQG TAPRRIRLQI EQPFTPVNNE  480
KERDVDNHEE EEVQSAMTMI VEEDEKCFLD KDKSRAQGHA SLSEATNLNT QGTAHRRIRL  540
QTRIRKLPII PKNTGRDSNH SEEVAMHSKE KEDVSASSSS SWQQHKLMRK RMVKCSSMVV  600
IMAVMVLLVG IWKESRYAKC SFLFHQLDSF KGMFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-4711667170NAC domain-containing protein 19
3swm_B2e-4711667170NAC domain-containing protein 19
3swm_C2e-4711667170NAC domain-containing protein 19
3swm_D2e-4711667170NAC domain-containing protein 19
3swp_A2e-4711667170NAC domain-containing protein 19
3swp_B2e-4711667170NAC domain-containing protein 19
3swp_C2e-4711667170NAC domain-containing protein 19
3swp_D2e-4711667170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052195001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382690.0KF738269.1 Brassica napus NAC transcription factor 14 (NAC14.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637676.10.0PREDICTED: NAC domain-containing protein 14 isoform X2
RefseqXP_022568276.10.0NAC domain-containing protein 14-like isoform X2
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A078JK120.0A0A078JK12_BRANA; BnaCnng49700D protein
TrEMBLA0A0D3CGK80.0A0A0D3CGK8_BRAOL; Uncharacterized protein
STRINGBo5g086780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.10.0NAC 014
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]