PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052213001
Common NameGSBRNA2T00052213001, LOC106378754
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 315aa    MW: 36449.2 Da    PI: 9.6225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052213001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-1472118147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W   Ed +l ++v   G+ +W+ Ia++m+ +Rt+k+c++rw++ 
  GSBRNA2T00052213001  72 RGHWRVSEDSQLMELVSACGPQNWNHIAEKMQGRRTGKSCRLRWFNQ 118
                          899*****************************9***********996 PP
2Myb_DNA-binding482.9e-15126169247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +++ eE+e+l+ a++ +G++ W+ Ia+ ++ +Rt++ +k++w+ +
  GSBRNA2T00052213001 126 RAFSVEEEERLLAAHRAFGNK-WAMIAKLFN-RRTDNALKNHWHVL 169
                          689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.867119IPR017930Myb domain
SMARTSM007174.9E-1171121IPR001005SANT/Myb domain
PfamPF002491.7E-1372118IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-2572166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-2273126IPR009057Homeodomain-like
CDDcd001671.91E-875117No hitNo description
PROSITE profilePS5129424.952120174IPR017930Myb domain
SMARTSM007171.0E-12124172IPR001005SANT/Myb domain
PfamPF002498.0E-12126169IPR001005SANT/Myb domain
CDDcd001671.50E-8127170No hitNo description
Gene3DG3DSA:1.10.10.605.9E-19127174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVIEERDQEK GYMDVSCFQE YPFDLHCRGA FNGFGENNAV ELSNKRSILK ESDEFKKKKK  60
KKQRGSSRVC SRGHWRVSED SQLMELVSAC GPQNWNHIAE KMQGRRTGKS CRLRWFNQLD  120
PRINKRAFSV EEEERLLAAH RAFGNKWAMI AKLFNRRTDN ALKNHWHVLM ARKLRQQSTS  180
YLRRINESSY NPTSDHKTFT LPHGIVDDED MNLEKKSWKT LKEEYTTNLK AQYLQEEYCS  240
LRMPMQGPHH HSPTFPADSL ALTLHVSIQE PSLSPSLSSS SCAEHRVVAR YFETTKPPAF  300
IDFLGVGHQS PNKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25721744105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-25721744105C-Myb DNA-Binding Domain
1msf_C1e-25721744105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15561KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052213001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674288.10.0transcription factor MYB105
TrEMBLA0A078JI420.0A0A078JI42_BRANA; BnaCnng49790D protein
STRINGBo2g150020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-146myb domain protein 110
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]