PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052419001
Common NameGSBRNA2T00052419001, LOC106381848
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 225aa    MW: 25439.2 Da    PI: 6.7912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1385.8e-4361323128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +GfrF+Ptdeelv +yL++k +g   ++ +++i++v+i++++Pw+Lp  ++++++++ wyfF +++++y++g+r++r+tksgyWk+tgk+
  GSBRNA2T00052419001   6 VGFRFRPTDEELVEHYLRPKNNGGGsTTSSQIINTVNICNLDPWELPplSRMASSDQVWYFFGRKESRYNRGERQKRKTKSGYWKKTGKT 95 
                          8*******************999884444567**************9665999999********************************** PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++k  ++e++g k++L+fy     +g++++Wvmheyr+
  GSBRNA2T00052419001  96 LPITRKsgNHETIGEKRVLMFY----TNGSRSNWVMHEYRA 132
                          *****9877888**********....78999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.1374151IPR003441NAC domain
SuperFamilySSF1019416.67E-455151IPR003441NAC domain
PfamPF023651.2E-266131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGNNMVGFRF RPTDEELVEH YLRPKNNGGG STTSSQIINT VNICNLDPWE LPPLSRMASS  60
DQVWYFFGRK ESRYNRGERQ KRKTKSGYWK KTGKTLPITR KSGNHETIGE KRVLMFYTNG  120
SRSNWVMHEY RASCLSPNDS GAYTICKVQF KGEASEISSS SGVDHVVHTH SLPTPMNNPV  180
GSEGLQSPSQ FSGNQQEMQF DAETEMDFED LLNYDLNSLL DSEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-25713118139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052419001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118784.11e-168PREDICTED: NAC domain-containing protein 4-like isoform X1
SwissprotO819147e-72NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A078H1691e-168A0A078H169_BRANA; BnaA09g51460D protein
STRINGBra032615.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-73NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]