PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052589001
Common NameGSBRNA2T00052589001, LOC106381126
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 363aa    MW: 41080.1 Da    PI: 4.6052
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.24e-31181072102
                          HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl+k ye+++d++++++isws +  nsfv++d++ f+ ++LpkyFkhsn++SFvRQLn+YgF+kv+            weF++++F +g+
  GSBRNA2T00052589001  18 FLRKCYEMVDDSSTDSIISWSsSADNSFVISDTNVFSAQLLPKYFKHSNLSSFVRQLNIYGFRKVD------------WEFANDWFVRGR 95 
                          9********************7778***************************************95............************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          k+ll+++ r+k+
  GSBRNA2T00052589001  96 KDLLKNVIRRKN 107
                          ******999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-329100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.54E-3013105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-4714105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2718105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVKSSDGVSS SSSSVAPFLR KCYEMVDDSS TDSIISWSSS ADNSFVISDT NVFSAQLLPK  60
YFKHSNLSSF VRQLNIYGFR KVDWEFANDW FVRGRKDLLK NVIRRKNVQS SDHQSKSVSK  120
KQESTCKEDD TEKSELWKEV DILKGDKKAL AQELVKVRQY QEVTDTKMLH LEDRVQGMEE  180
SQQEMLSFLV MVMQNPSLLV QLLQPKESSW RKAEGGGGGA KILEEVIDEG ESDSSGLPLV  240
TYQQPQSEGT AKSSSSDMND FLRNADMLKF CLDENHVPLI IPDLYDDGAW EKLLLLSPSK  300
KKNVKKGKDD ATLKEEEEDE TMKVIQEEME RADDFDFGQL TPERSRNLEI LTQQIALLAS  360
NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-24910520129Heat shock factor protein 1
5d5v_B4e-24910520129Heat shock factor protein 1
5d5v_D4e-24910520129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052589001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676451.10.0heat stress transcription factor A-8 isoform X1
RefseqXP_013676452.10.0heat stress transcription factor A-8 isoform X2
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A078H6Z90.0A0A078H6Z9_BRANA; BnaC02g17710D protein
STRINGBo2g056350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-167heat shock transcription factor A8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]