PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052605001
Common NameGSBRNA2T00052605001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 252aa    MW: 29392.1 Da    PI: 8.9802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052605001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.8e-121764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l+  +   G  +W+t++   g+ R +k+c++rw +yl
  GSBRNA2T00052605001 17 KGLWSPEEDQKLKSFILSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64
                         678*******************************************97 PP
2Myb_DNA-binding52.11.5e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg +++eE+e ++ ++  lG++ W++Ia++++ gRt++++k++w++yl
  GSBRNA2T00052605001  70 RGTFSAEEEETILILHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115
                          899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6331264IPR017930Myb domain
SuperFamilySSF466891.28E-2614111IPR009057Homeodomain-like
SMARTSM007172.0E-71666IPR001005SANT/Myb domain
PfamPF002492.8E-101764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-191871IPR009057Homeodomain-like
CDDcd001676.56E-62064No hitNo description
PROSITE profilePS5129426.77165119IPR017930Myb domain
SMARTSM007171.0E-1469117IPR001005SANT/Myb domain
PfamPF002493.1E-1570115IPR001005SANT/Myb domain
CDDcd001673.82E-1072115No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2572117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFSAEEEET ILILHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKGCL  120
KSQPPLKTQR NPETLDHVIS FQTLPEKPYS PPSQGSNKNM MNSNNMPKLF FSEWITSSDP  180
RVNYSSEFTD SLHINQTQNR NEDEELMMIK NSYSSLEDDV MFRTEFQQPH HEYANYYTSE  240
DFFINSDVTY M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23171177106B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052605001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196361e-146AY519636.1 Arabidopsis thaliana MYB transcription factor (At5g52260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681885.10.0transcription factor LAF1-like
RefseqXP_013683361.10.0transcription factor LAF1-like
SwissprotQ9M0K42e-87LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A078H5880.0A0A078H588_BRANA; BnaC03g15570D protein
STRINGBra029129.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-129myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]