PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052630001
Common NameGSBRNA2T00052630001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 387aa    MW: 44657.5 Da    PI: 7.0101
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052630001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025149172123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C+ Cg+ ++++ +Lk+H +  H
  GSBRNA2T00052630001 149 YICGVCGRKCRTNLDLKKHFKQlH 172
                          89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.2E-569139IPR029060PIN domain-like
PROSITE profilePS5015710.637149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
CDDcd061674.00E-11163303No hitNo description
Gene3DG3DSA:3.40.50.10103.2E-5234288IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSLFCNSIDT LYPKPYLPHK PHFFSLSDAK LRNLSFAGFP HLRIKSCLKS ASSSEIDMVR  60
NKEGVFAPKE KKVVVLWDLD NKPPRGPPYE AATELRRVAE KLGRVVEISA YANRHAFIHL  120
PHWVVEERRS RRSLDFAERK GEVIPSEPYI CGVCGRKCRT NLDLKKHFKQ LHERERQKKV  180
NRMRSLKGKK RQKFKERYVS GNEKYNDAAR RLLTPKVGYG LEAELRRAGV YVKTVEDKPQ  240
AADWAVKRQM QHSMTRGIDW LVLVSDDKDF SDMLRKAREA DLGTVVVSDR DGVLGRQADL  300
WVPWMGVENG EFGEKDLVPE KRRRFDDEDE LFSLAYDEDE REEMRVESDG FGRFSVSAFS  360
EDEWVDDEGD FALSDSDDDS DDELGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052630001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683341.10.0uncharacterized protein BNAC03G15730D
RefseqXP_022569221.10.0uncharacterized protein LOC111212087
TrEMBLA0A078H1T10.0A0A078H1T1_BRANA; BnaC03g15730D protein
STRINGBo3g023500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]