PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052631001
Common NameGSBRNA2T00052631001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 454aa    MW: 49281.7 Da    PI: 7.7223
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052631001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07128149426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + Cr++   G C++Gd+C+F H+
  GSBRNA2T00052631001 128 KVCRYWVD-GSCSHGDKCRFLHC 149
                          68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0184469IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.3244470IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389124151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-6125148IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4126150IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5127149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5128147IPR000571Zinc finger, CCCH-type
SuperFamilySSF509787.94E-45141443IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.4E-45148444IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-6155194IPR001680WD40 repeat
PfamPF004001.7E-5158194IPR001680WD40 repeat
PROSITE profilePS5029420.856162364IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.418162203IPR001680WD40 repeat
PROSITE patternPS006780181195IPR019775WD40 repeat, conserved site
PRINTSPR003207.7E-7181195IPR020472G-protein beta WD-40 repeat
SMARTSM003203.8234271IPR001680WD40 repeat
SMARTSM003200.07278315IPR001680WD40 repeat
PROSITE profilePS5008211.444285324IPR001680WD40 repeat
PRINTSPR003207.7E-7302316IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4318355IPR001680WD40 repeat
PfamPF004000.0049320354IPR001680WD40 repeat
PRINTSPR003207.7E-7342356IPR020472G-protein beta WD-40 repeat
SMARTSM0032013359402IPR001680WD40 repeat
SMARTSM003203.4405442IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MICFDSIRDR TETLGPMDFD SNGGNKRVFN RLGGPTRPSP QQTNTRQQVC FHWRAGRCYR  60
NPCQFLHREL PAGPVPNHAN KRAPDESGFA GPSHRRGPGF NGSHSSNSSN TWGRFGGNSR  120
AVVTKTEKVC RYWVDGSCSH GDKCRFLHCW SRGDGFSLLT QLDGHEKLVS GIALPSGSDK  180
LYTGSKDGTI RVWDCASGQC TSVLNLGAEV GCVIAEGPWL LVGMPNLVRA WNMETNTDQS  240
LSGPVGQVYS LVVGSDLLFA GTHDGSILAW RYNAATNCFE PAASLMGHTV AVVTLYVGAN  300
RLYSGSMDKS IKVWSLENLQ CIQTLTDHTS VVMSLICWDQ FLLSCSLDNT VKIWAAVEGG  360
NLEVTYTHKE ENGVLALCGV HDAEAKPVLL CSCNDTTLRL YDLPSFTERG KIFAKQEIRS  420
IQIGPGGIFF TGDGTGQVKV WKWSTAPAAA AMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-201474525323Tako8
6g6n_A2e-201474525323Tako8
6g6n_B2e-201474525323Tako8
6g6n_C2e-201474525323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.68670.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052631001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683340.10.0zinc finger CCCH domain-containing protein 63-like
RefseqXP_022569220.10.0zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A078H4700.0A0A078H470_BRANA; BnaC03g15740D protein
STRINGBo3g023510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]