PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052776001
Common NameGSBRNA2T00052776001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 624aa    MW: 69426.6 Da    PI: 5.3699
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052776001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.19.5e-29199252155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W++eLH++Fv+av+qL G +kA+Pk+il+ m+++gLt+e+v+SHLQkYRl
  GSBRNA2T00052776001 199 KRRVVWSQELHQKFVHAVQQL-GLDKAVPKKILDYMNIEGLTRENVASHLQKYRL 252
                          689******************.********************************8 PP
2Response_reg69.91.1e-23201271109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + +
  GSBRNA2T00052776001  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMK 106
                          799********************.***************999999******************985344..57***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l+Kp++ +el++
  GSBRNA2T00052776001 107 GIIHGACDYLVKPVSLKELRN 127
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.8E-1571622IPR017053Response regulator B-type, plant
SuperFamilySSF521729.39E-3117135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-3417167No hitNo description
SMARTSM004489.1E-2718129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.18119133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2120128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.63E-2042132No hitNo description
PROSITE profilePS5129413.888196255IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-29197256IPR009057Homeodomain-like
SuperFamilySSF466893.23E-20197256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25199252IPR006447Myb domain, plants
PfamPF002491.2E-9201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MESVSNEEGR SDQFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREK  60
SNMFDLVISD VEMPDTDGFK LLEIGLEMDL PVIMLSAHSD YDSVMKGIIH GACDYLVKPV  120
SLKELRNIWQ HVVKKNIGSY KKIIAPSRHL LPTSEYAPSG SGKRKEKADD SGDGDDDSDR  180
DDEEDGSEQD GDESSNRKKR RVVWSQELHQ KFVHAVQQLG LDKAVPKKIL DYMNIEGLTR  240
ENVASHLQKY RLYLKKLDEG QQHNMSQDAF GSRDSSYFHM AQLEGLRDYS STRQLSSSSL  300
LTRSSLTKFH PSVYSSVNLQ GSNSSSFIPP GHHQSSSSSA NPFGTYHSPL LARSQNVNLS  360
PLEPLQFPRS KCSPYMGDFK GIADRGIGSS FLDSRMSFGS SSTSLPCATS NNLMLQENFG  420
VSDGNLSCLN GLSSFPSHHS WQGNLKTTTR FPSHSLPLNH AFGQDQMTCG GIGLGDYNTS  480
LVSADSHVGV LQCEPPFLGD FMQNMNTHKW EEQNCTMMNN TFGNVDYPLP VDNNMVFRDN  540
NATRSKGVDD SLMMSPIEDS ATTLNSRECV GNVTMMDPEM RSSTKLENDL VDNQNDVFDD  600
IMNEMLKQDE NNGMVSVAAR FGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21197257363ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue developing anthers, and siliques. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052776001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240291e-46AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026881e-46CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126790.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLA0A078H2790.0A0A078H279_BRANA; Two-component response regulator
STRINGBra020390.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]