PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052814001
Common NameGSBRNA2T00052814001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 197aa    MW: 21269.9 Da    PI: 8.1346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052814001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-0894121330
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIart 30 
                          +WT+eE+  ++ + ++lG+g+W+ I+r 
  GSBRNA2T00052814001  94 PWTEEEHRTFLIGLEKLGKGDWRGISRN 121
                          8************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.106.2E-4320IPR001878Zinc finger, CCHC-type
SuperFamilySSF466899.36E-789122IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-890124IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.6E-891121IPR009057Homeodomain-like
CDDcd001672.10E-594122No hitNo description
PfamPF002492.0E-594121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRRCSHCGN VGHNSRTCSS YKTRVIRLFG VHVDTRGSSP PPLPPPPSSL LAAAMKKSFS  60
MDCLPACSTS SSSFAGYLSD GLTHRTPDRK KGVPWTEEEH RTFLIGLEKL GKGDWRGISR  120
NFVVFAGNFE ENSTIPGNDR IGSTTDVVWK QGSVNPCLGY QDPEVSEPGD SGELDLDLKL  180
ASLRTSESNI RPISVT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052814001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195171e-117AY519517.1 Arabidopsis thaliana MYB transcription factor (At5g56840) mRNA, complete cds.
GenBankBT0125281e-117BT012528.1 Arabidopsis thaliana At5g56840 gene, complete cds.
GenBankBT0149561e-117BT014956.1 Arabidopsis thaliana At5g56840 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120194.11e-126PREDICTED: uncharacterized protein LOC103845112
SwissprotQ7XC574e-28MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A078H4H91e-142A0A078H4H9_BRANA; BnaA10g10930D protein
STRINGBra002790.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-86MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]