PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00052939001

Common Name

GSBRNA2T00052939001, GSBRNA2T00127904001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 267aa MW: 29321.8 Da PI: 4.4135

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00052939001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.7	1.3e-12	14	53	1	40
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+i +ks + vtf+kRr g++ KA L+ L da++a++ GSBRNA2T00052939001 14 KKITDKSSKAVTFTKRRDGLFSKAAQLCLLGDAQIAILAT 53 6899********************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.979	6	57	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.0E-14	6	65	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.05E-22	7	86	No hit	No description
PRINTS	PR00404	7.5E-8	8	28	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-16	8	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-12	15	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-8	28	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVKRGGTKRK AEIKKITDKS SKAVTFTKRR DGLFSKAAQL CLLGDAQIAI LATPSSSHSN 60 VPFFSFGHSS VDSVVSAYLS GQRPAPPPVP EDSKEMREDI AVCMARKELG LGYWWEDEKL 120 LASKSRDEIM EAMESMHILW KAAERLREDE AIDFDQREGS LEKMEDMSND QTTLISTEDD 180 QIIAVCDSFF NYNNNNAALS TTPPDEDEHH HQIEAVSENY CSNKNALLSP PAAAGGGLND 240 LANVDLDTIF EGLADLDAEL VASFLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00052939001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715048.1	0.0	agamous-like MADS-box protein AGL97
Refseq	XP_013720021.1	0.0	agamous-like MADS-box protein AGL97
TrEMBL	A0A078CKG7	0.0	A0A078CKG7_BRANA; BnaC08g02610D protein
STRING	Bo8g011140.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49420.1	1e-63	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]