PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053001001
Common NameGSBRNA2T00053001001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 402aa    MW: 45069.3 Da    PI: 7.0572
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053001001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.52.3e-35421941128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                          lp+G++F+Ptd+elv e+L++kv+gk+           +   +    +i+   +i++++P++Lp  v+++  + +fF+k +++y+tg+rk
  GSBRNA2T00053001001  42 LPAGVKFDPTDQELV-EHLEAKVKGKEgnkkwfpshplI---DefipTIDGEdGICYTHPQKLP-GVTKDGLSKHFFHKPSRAYTTGTRK 126
                          799************.99*********887777765432...133223555535**********.555666799**************** PP

                  NAM  75 nra.............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          +r+              ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  GSBRNA2T00053001001 127 RRKiiqtehdselngsSSETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194
                          **8899999999998877899************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-3834213IPR003441NAC domain
PROSITE profilePS5100531.51642213IPR003441NAC domain
PfamPF023659.1E-1643194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MKNTFNLIDS KLEEHHYLCG SKHCPGCGRM IQAATKPNWF GLPAGVKFDP TDQELVEHLE  60
AKVKGKEGNK KWFPSHPLID EFIPTIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY  120
TTGTRKRRKI IQTEHDSELN GSSSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV GNINWSEQNV SSKGLIGIGA  240
GDEICGVAAA LQSLGSGDVI SRVNTNPFTR AFDEGTAEAS KGRENRLVSG TCEEVHDGII  300
RSSSSTSYHM IHDHNQHDHQ IGEIREFHIP SSSSYHESIF NITSTVPSQQ QQLRGRSSGS  360
GLEDLIMGCT STCTEEENSE AIPEQNADWL TFPPSWYDQS Y*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053001001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564850.10.0NAC domain-containing protein 73-like isoform X1
SwissprotQ9M0F81e-116NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A078H5Z60.0A0A078H5Z6_BRANA; BnaC09g33190D protein
STRINGBo9g126190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]