PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053135001
Common NameGSBRNA2T00053135001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 247aa    MW: 28686.9 Da    PI: 6.9547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053135001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.4e-1085133154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+r h + Er RR + ++++  L +llP a     +K++K +i+ekAv+ I +L
  GSBRNA2T00053135001  85 RCRQHMMKERTRRMKQKQSYLALHSLLPFA-----TKNDKNSIVEKAVDQIGKL 133
                          6889**************************.....9*************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-1179148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-882133No hitNo description
PROSITE profilePS5088812.19584133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-785133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-787151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDNFFLDSIW EEEDIFWDLI AGDVSGNADN TVSVLDRSAF RSYVRDTEQT MVSSSSSVNV  60
NKRMLNLLRK IWEEKKNALA PEKERCRQHM MKERTRRMKQ KQSYLALHSL LPFATKNDKN  120
SIVEKAVDQI GKLDEYKKEL ERRMNVLEAK SATDHDKIMT GTKIRFSLQE PLSGIDSMVE  180
ILQCLKSMGT KLKTVQANFS PQEFSATMNI ETQVYVHFIF FLVEKRLQET EWKLLVLPDA  240
SRIEDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053135001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659392.11e-153transcription factor bHLH92-like isoform X1
SwissprotQ9FIX51e-114BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A078H6710.0A0A078H671_BRANA; BnaA09g16560D protein
STRINGBra027501.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-110bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]