PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053136001
Common NameGSBRNA2T00053136001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 137aa    MW: 15090.9 Da    PI: 8.3519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053136001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-053557123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H++ H
  GSBRNA2T00053136001 35 YECTFCKRGFTNAQALGGHMNIH 57
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-73262No hitNo description
Gene3DG3DSA:3.30.160.605.4E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00973557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1363562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MQNMECDRSS SSTSSESGAV LHHLTTSSTV TRRMYECTFC KRGFTNAQAL GGHMNIHRRD  60
RLNKAAKQQN DADVALSSAR RCFHVASSDR GGYEQVESVV LRATTNLSLR IGSMVTRREN  120
VVVEGDEIDL ELRLGL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.134491e-163seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053136001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895911e-142AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113984.12e-95PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A078H7R32e-94A0A078H7R3_BRANA; BnaA09g16550D protein
TrEMBLA0A3N6RDV72e-94A0A3N6RDV7_BRACR; Uncharacterized protein
TrEMBLA0A3P6E4L72e-94A0A3P6E4L7_BRAOL; Uncharacterized protein
STRINGBo9g059250.13e-94(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-56C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]