PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053275001
Common NameGSBRNA2T00053275001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 598aa    MW: 67370.2 Da    PI: 6.3893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053275001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.13e-1202105841374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                          l++lL++cA+av+s d+++a++ L++++ ++sp+gd +qRla+yf+eAL+ar+++  ++ l+ a+p+s+ts   +++ l+a+klf++v+P
  GSBRNA2T00053275001 210 LRSLLTQCAQAVASFDHRRATEKLKEIRSNSSPSGDGIQRLAFYFAEALEARITGiISPPLCTAFPSSTTS---MVDILKAYKLFVHVCP 296
                          6899***************************************************8889999999999998...**************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                          i+   +++aN+ I+e + +++++HiiDf++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f++ ++vpfe
  GSBRNA2T00053275001 297 IYVADYFAANKSIYELALSSTKLHIIDFGVLYGFQWPCLLLALSKRPGGPPKLRVTGIELPQSGfrPSDRVEETGRRLKRFCDMFNVPFE 386
                          ***************************************************************9************************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          fn+ +ak++e+++l+e+ + pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+l
  GSBRNA2T00053275001 387 FNF-IAKKWESITLDEITITPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMTRFKEALFHFSSL 475
                          ***.7************************************************************************************* PP

                 GRAS 268 fdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                          fd++++++ +e+  ++r+ +Erell r++++v++ egaer++r et+++Wr r+ +aGF+p+ +s+++ k ak ++rk + + + ++ + 
  GSBRNA2T00053275001 476 FDMFDTTIQAEDeyKNRALLERELLVRDAMSVISSEGAERFARPETYKQWRVRILRAGFRPAMISKEILKGAKEIVRKRYHKDFLIDGDA 565
                          *******99998899*****************************************************************888******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          +++++gWk+r ++++S+W+
  GSBRNA2T00053275001 566 NWMLQGWKGRVIYAFSCWK 584
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.133184564IPR005202Transcription factor GRAS
PfamPF035141.0E-117210584IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDALLQVSVD GFRFDGSGSG SCCKPRNNLE TQNQSSPPSI CQDNAPVLKY INDMLMDEED  60
FVEDNLALQA AERSFHELLH QPPSSESSDQ NSTSSGEHDC SFPSTTTTDS AGSLVSNGES  120
QRKYRHRDNE EDDLENGRRN KQPAIFISEM EELAAKFEHV LLVCKSNQED DSSSSTTTAT  180
TKKQNPPPPP NKATGRAKGS KAIKSNAVDL RSLLTQCAQA VASFDHRRAT EKLKEIRSNS  240
SPSGDGIQRL AFYFAEALEA RITGIISPPL CTAFPSSTTS MVDILKAYKL FVHVCPIYVA  300
DYFAANKSIY ELALSSTKLH IIDFGVLYGF QWPCLLLALS KRPGGPPKLR VTGIELPQSG  360
FRPSDRVEET GRRLKRFCDM FNVPFEFNFI AKKWESITLD EITITPGETT VVNCIHRLQY  420
TPDETVSLDS PRDTVLKLFR DINPDLFVFA EINGTYNSPF FMTRFKEALF HFSSLFDMFD  480
TTIQAEDEYK NRALLERELL VRDAMSVISS EGAERFARPE TYKQWRVRIL RAGFRPAMIS  540
KEILKGAKEI VRKRYHKDFL IDGDANWMLQ GWKGRVIYAF SCWKPAEKLT RDDHIII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-422105845375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.77800.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and sepals. Expressed in siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053275001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716785.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A078H3730.0A0A078H373_BRANA; BnaA10g12460D protein
STRINGBo9g139410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]