PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053376001
Common NameGSBRNA2T00053376001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 188aa    MW: 21840.4 Da    PI: 7.0759
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053376001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-101238127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++t+ C+f++rtG C yG++C+++H++
  GSBRNA2T00053376001 12 PGTKDCQFYLRTGRCGYGENCCYNHPK 38
                         689**********************96 PP
2zf-CCCH23.68.7e-084870427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         + C+ff+r G Ck G+ C F H++
  GSBRNA2T00053376001 48 PKCKFFLR-GKCKNGSHCDFDHSK 70
                         78******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1971139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-61138IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-61138IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-81238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-51438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4934471IPR000571Zinc finger, CCCH-type
SMARTSM003560.00524470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-64769IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-54770IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MMVESSEYPV RPGTKDCQFY LRTGRCGYGE NCCYNHPKEI PTGEINMPKC KFFLRGKCKN  60
GSHCDFDHSK EGDGAEHTRQ GQKRYKTEST SRSSPSPEKR KHRQEDIDKQ STEAEDILQG  120
EKLREMQEND NDQQKLVEQR KRDIERQRRD ARLSLEQIKQ TVHFDEAIRI REILTELGFI  180
ITEGDGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053376001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547471.11e-123putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A078JLS71e-136A0A078JLS7_BRANA; BnaCnng50350D protein
STRINGBo5g060890.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-19C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]