PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00053746001

Common Name

GSBRNA2T00053746001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 438aa MW: 47631.6 Da PI: 7.8974

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00053746001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.7	3.9e-15	73	155	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Li+a ++ ++ ++g lk+++W ev++ + + ++ ++ +qCk++++ ++k+yk++k+ ++ s++++f++le GSBRNA2T00053746001 73 CWSEEATKVLINAWGDRFSEPGKGTLKQQQWHEVAEIVnesGQCKYAKTDVQCKNRIDTVKKKYKQEKAKNGP------SKWAFFKKLE 155 7***********************************5444455899*******************97......58****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-23	72	157	No hit	No description
Pfam	PF05564	4.6E-7	325	406	IPR008406	Dormancy/auxin associated protein

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEEEDKTQSQ QSPRDALSPA PILPTSNVTV ASATKPPPSS SSQSPLALVV QTPSVNRNGR 60 IGGGGGGGGR DDCWSEEATK VLINAWGDRF SEPGKGTLKQ QQWHEVAEIV NESGQCKYAK 120 TDVQCKNRID TVKKKYKQEK AKNGPSKWAF FKKLESLIGG GGNAPVGARS SGPMRWHFRK 180 RSASETESES ESEPEHSAEN LPPTQPLPKR LKMGESGVGD VAKAILGFTE AYEKAETAKL 240 KLMMELEKER MKFAKEMELQ RMHFLITQVE ITRTNQEEER SKRDGDDDDR NVKNNGDKFI 300 AGVQRTVMTI IIMLLCYVIL SETRLWDDTV AGPAPENGLG ELRKHVSLAT VQSPPLSTDQ 360 VTRSIVVTKG NNNVRGLRNL KMGPGRAPDS PTGSSSTPGT PLTPGTPCDH FGPFSADKIP 420 SAGEVDASSL TTYEWLV*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEEEDKTQSQ QSPRDALSPA PILPTSNVTV ASATKPPPSS SSQSPLALVV QTPSVNRNGR  60
IGGGGGGGGR DDCWSEEATK VLINAWGDRF SEPGKGTLKQ QQWHEVAEIV NESGQCKYAK  120
TDVQCKNRID TVKKKYKQEK AKNGPSKWAF FKKLESLIGG GGNAPVGARS SGPMRWHFRK  180
RSASETESES ESEPEHSAEN LPPTQPLPKR LKMGESGVGD VAKAILGFTE AYEKAETAKL  240
KLMMELEKER MKFAKEMELQ RMHFLITQVE ITRTNQEEER SKRDGDDDDR NVKNNGDKFI  300
AGVQRTVMTI IIMLLCYVIL SETRLWDDTV AGPAPENGLG ELRKHVSLAT VQSPPLSTDQ  360
VTRSIVVTKG NNNVRGLRNL KMGPGRAPDS PTGSSSTPGT PLTPGTPCDH FGPFSADKIP  420
SAGEVDASSL TTYEWLV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12800	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269\|PubMed:19155348}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269\|PubMed:19155348, ECO:0000269\|PubMed:21330492, ECO:0000269\|PubMed:22231199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00053746001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ973845	0.0	DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591757.1	0.0	PREDICTED: trihelix transcription factor ASIL1
Refseq	XP_013643641.1	0.0	trihelix transcription factor ASIL1-like
Swissprot	Q9SYG2	1e-109	ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBL	A0A078H8B0	0.0	A0A078H8B0_BRANA; BnaC06g06860D protein
TrEMBL	A0A3P6GR51	0.0	A0A3P6GR51_BRAOL; Uncharacterized protein
STRING	Bo6g033010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8910	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	6e-94	6B-interacting protein 1-like 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]