PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053948001
Common NameGSBRNA2T00053948001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 704aa    MW: 77391.7 Da    PI: 6.9045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053948001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-0858100347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  GSBRNA2T00053948001  58 AWTHQEEESFFTALRQVGKN-FAKITSRVQ-SKNKDQVRHYYYRL 100
                          6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1150105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-653103IPR009057Homeodomain-like
PROSITE profilePS5129313.17554105IPR017884SANT domain
SMARTSM007174.6E-655103IPR001005SANT/Myb domain
CDDcd001671.50E-558101No hitNo description
PfamPF002491.9E-658100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MLEKSCAMQA EKEVSLSSQG PKEEGRESNQ NSNPNIASSA SIAVPQFPAK KPTRQWAAWT  60
HQEEESFFTA LRQVGKNFAK ITSRVQSKNK DQVRHYYYRL VRRMNKLLGP ELSLDAKNPK  120
DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KLFLEALEHQ LLKDRRKSSR KRACHGERLD  180
SSPFKLILCD SQNVRPGRAS TKHGESLGVR LGDEKEDTAL GRAGRQRRKQ AGYRKWEKAA  240
IDGVSLVADA AEHLERTSID KDVNGQKDLG PTRYLTGKSP LSLPSSGEAP LSDANMQFSA  300
KLKLQLFPID ESTRRSLEAD KHNPHLELTL SNRKKISSVL EHLNRKWGSS SCACGELMLF  360
PYNARKETVA LHQRWTNDSF LSAVEVYSMV GSPSLFRLRY GWFVQDASGC LISQVPTSAS  420
CPSLEDNMNV DDANEVNMLL TESGPLSNKR PTSEQATSVA CAAAEARDNY EPASAAITPF  480
DHLNSGNTLS AGAWADSLTN ISIGDLLSEA PDCVDPPATE GSHCLLRDVS FASDSFDAAI  540
AAHILRHQNK PSGLIPVTSG SSSLWDDEDT RDAFSFQKTR RANLSKFADV ASNGEPSQVV  600
EATSGDEGPC NLPDQQGDPM EEGPADPPTM DSPGKTIYGL ADVYWPDSLG PLDLDIRSSK  660
YAEDLNLSDS LGGLSRLIAT SLDAFQNCSL FGFDSKKDKS NMV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053948001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644367.10.0TSL-kinase interacting protein 1-like isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A078H3J50.0A0A078H3J5_BRANA; BnaC04g08290D protein
STRINGBo4g031010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]