PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054200001
Common NameGSBRNA2T00054200001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 193aa    MW: 22366.2 Da    PI: 10.5791
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054200001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-1449106355
                  AP2   3 ykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV++++++gr++A+++d  s+n    k+ ++++lg f  ++ Aa+a++ a++k++g
  GSBRNA2T00054200001  49 YRGVTRHRWTGRYEAHLWDkNSWNEtqsKKgRQVYLGEFVLEDAAARAYDLAALKYWG 106
                          9******************888877877557**********99*************98 PP
2AP229.81.5e-09149183138
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                          s+y+GV  ++ +grW+A+I   +   g +k+ +lg++g 
  GSBRNA2T00054200001 149 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYGN 183
                          89****************99966...3.6*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1647115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-1548114IPR001471AP2/ERF domain
SMARTSM003802.1E-2348120IPR001471AP2/ERF domain
PROSITE profilePS5103219.78348114IPR001471AP2/ERF domain
PRINTSPR003671.2E-54960IPR001471AP2/ERF domain
PfamPF008473.1E-1149106IPR001471AP2/ERF domain
PRINTSPR003671.2E-596116IPR001471AP2/ERF domain
PfamPF008472.8E-5149182IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-5149183IPR016177DNA-binding domain
PROSITE profilePS510328.57150192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-4150181IPR001471AP2/ERF domain
SMARTSM003800.075150188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKEISRRSKK TSVENKTGDE TSASSVVPKT KRKRRSQPRD APPQRSSMYR GVTRHRWTGR  60
YEAHLWDKNS WNETQSKKGR QVYLGEFVLE DAAARAYDLA ALKYWGRDTV LNFPLCNYEE  120
DIKDMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT  180
YGNLYKPSFI LT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054200001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459151e-170AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBankAY1338801e-170AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638688.11e-117PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_013688699.11e-117AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-108AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A078H6591e-140A0A078H659_BRANA; BnaC05g12270D protein
STRINGBo5g021520.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-110ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]