PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00054328001

Common Name

GSBRNA2T00054328001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 366aa MW: 40743.1 Da PI: 9.1099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00054328001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.1e-08	91	139	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + rE+ RR+++N+ f eL +l ++ +K++Ka+iL+ + + +k+L GSBRNA2T00054328001 91 KSQKAGREKLRREKLNEHFVELGNVLDPD----RPKNDKATILTDTLQLLKEL 139 5566779****************9997....79*********9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.7E-12	89	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	89	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.728	89	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-5	90	143	No hit	No description
Pfam	PF00010	7.6E-6	91	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-6	95	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSLQKKKKKI ERGASTNEQQ ESFFVEPCLC LHLNRICPLP SILPAGESVL SLPPIDRLQL 60 TSSSLGFRSP LAKLGASSIK FSEVMDVSAR KSQKAGREKL RREKLNEHFV ELGNVLDPDR 120 PKNDKATILT DTLQLLKELT SEVNKLKSEY TALTDESREL TQEKNDLREE KTSLKSDIEN 180 LNLQYQQRLR SMSPWGAAMD HTVMMAPPPS FPYPMPMAMP PGSIPMHHPP MPSYTYFGNQ 240 NPSMMPAPYM PYMPPNTVVE QQSVHIPQNT RSREPRAKVS RESRSDKAED SNDVATQLEL 300 KTPGSTSDKD TSQRPEKSKR CKRNSNNNNS VEESSHSSKC SSSPSVRDNT SSSSVAGGLK 360 PDDAK*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSLQKKKKKI ERGASTNEQQ ESFFVEPCLC LHLNRICPLP SILPAGESVL SLPPIDRLQL  60
TSSSLGFRSP LAKLGASSIK FSEVMDVSAR KSQKAGREKL RREKLNEHFV ELGNVLDPDR  120
PKNDKATILT DTLQLLKELT SEVNKLKSEY TALTDESREL TQEKNDLREE KTSLKSDIEN  180
LNLQYQQRLR SMSPWGAAMD HTVMMAPPPS FPYPMPMAMP PGSIPMHHPP MPSYTYFGNQ  240
NPSMMPAPYM PYMPPNTVVE QQSVHIPQNT RSREPRAKVS RESRSDKAED SNDVATQLEL  300
KTPGSTSDKD TSQRPEKSKR CKRNSNNNNS VEESSHSSKC SSSPSVRDNT SSSSVAGGLK  360
PDDAK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27378	0.0	seed\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00054328001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317507	0.0	AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBank	AY065107	0.0	AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615991.1	0.0	PREDICTED: transcription factor bHLH121
Refseq	XP_013615996.1	0.0	PREDICTED: transcription factor bHLH121
Refseq	XP_013648076.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	1e-164	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A078H7F9	0.0	A0A078H7F9_BRANA; BnaC01g33010D protein
STRING	Bo1g112310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	1e-134	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]