PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054775001
Common NameGSBRNA2T00054775001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 217aa    MW: 24026.8 Da    PI: 8.1815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054775001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17118168255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +  k +r +lg+f tae+Aa a+++a+ +++g
  GSBRNA2T00054775001 118 HYRGVRQRP-WGKFAAEIRDPAK--KGAREWLGTFETAEDAALAYDRAAFRMRG 168
                          8********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.42E-31117176No hitNo description
Gene3DG3DSA:3.30.730.101.0E-31117176IPR001471AP2/ERF domain
PROSITE profilePS5103224.012118176IPR001471AP2/ERF domain
PfamPF008474.7E-12118168IPR001471AP2/ERF domain
SMARTSM003801.0E-38118182IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23118178IPR016177DNA-binding domain
PRINTSPR003672.8E-13119130IPR001471AP2/ERF domain
PRINTSPR003672.8E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYGEGEITAA AESDYALLES IRRHLLGGDN ELRFNESIPS SCFTQSWGDL PLKENDSEDM  60
LVYSVLNDAF ETPSPSSDLS CLSDFNYFPA VKTESLDNFA AVVEKPKAVA APPGKGKHYR  120
GVRQRPWGKF AAEIRDPAKK GAREWLGTFE TAEDAALAYD RAAFRMRGSR ALLNFPLRVN  180
SGEPDPVRIK SKRSYKSSSS SENGKPKQRR RTENVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-42115183270ATERF1
3gcc_A2e-42115183270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054775001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892610.0AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693836.11e-146ethylene-responsive transcription factor 2-like
RefseqXP_013696643.11e-146ethylene-responsive transcription factor 2-like
SwissprotO803381e-102EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A078H9M81e-157A0A078H9M8_BRANA; BnaA06g35500D protein
STRINGBra024954.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-77ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]