PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054850001
Common NameGSBRNA2T00054850001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 316aa    MW: 34904.2 Da    PI: 6.0931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054850001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.9e-155099255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r +h+  E+rRR++iN++f+ Lre++P++     +K + a+ L ++++Y+++Lq
  GSBRNA2T00054850001 50 RSKHSVTEQRRRSKINERFQILREIIPNS----EQKRDTASFLLEVIDYVQYLQ 99
                         899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1846119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-2247121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0694898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-1450103No hitNo description
PfamPF000101.2E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1154104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRTGKANQEE DDYGEEDFGS KREGPSSNHS NSAAASRADV KENDKASAIR SKHSVTEQRR  60
RSKINERFQI LREIIPNSEQ KRDTASFLLE VIDYVQYLQE KVQKYEGSYP GWSQEPTKLT  120
PWRNNHWRVQ SLANGSVPLI PFPGKFEENS VAFSGPAVAE MQNPVESDQG RTAVYKPIDS  180
QPEFDDNKEL PPVQPIHHPL VHGEQANNEC PATSDGAGQS NNDLVVEGGT ISISTAYSHE  240
LLSSLTQALQ NAGVDLSHAK LSVQIDLGRR ANQGLTHNDP SNKNPFSSHT EGATRSRNPS  300
VEGESEHAHK RMKTL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.95870.0flower| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054850001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894581e-153AC189458.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592305.10.0PREDICTED: transcription factor BIM2
RefseqXP_013702654.10.0transcription factor BIM2-like
SwissprotQ9CAA41e-161BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A078H6T10.0A0A078H6T1_BRANA; BnaC06g29910D protein
TrEMBLA0A3P6FZM70.0A0A3P6FZM7_BRAOL; Uncharacterized protein (Fragment)
STRINGBo6g108530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-159BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]