PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054859001
Common NameGSBRNA2T00054859001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 483aa    MW: 51854.1 Da    PI: 5.0823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054859001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-09306354355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00054859001 306 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 354
                          58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17301372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-11301358No hitNo description
PROSITE profilePS5088815.478303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17304372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6306354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDVSEKDELR NGDDTTVNYD ESANIPPPDW RVSGSNPVSD SYPTENLISS SQMMETLWYD  60
PANVQAVGYG GFNGGGNPSS SSSFRGNIDR SLEMGWSLPN LLPPKGGNGM FLPNASSFLP  120
PSMAQFPADS GFIERAARFS LFSGGSFSDM MNQQQPLGNP ESVGLFLQGQ CPSSEVNVVG  180
VAHNDASSAM KETNKQNVPG SGNVSEDTQS SGGNGQKGGE TSSKGFDSKK RKRNKQNAGA  240
DQSNRSQQSE EEPDNNNGGG AEKRNDEQSP NSQGNKTNSG KQQGKQASDP KDGYIHVRAR  300
RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL  360
SMKLATVNPQ MDFNREGLLA KDALQLRAGT SSATPFPPNM PMVYPPLPHG FMQQTLSCMG  420
RTVSSPLSPP INGGYKRQEA NGWEGDLQNV IQINYGAGDV PPDSQAAATD ASLPSSNMKV  480
EP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235KKRKRNKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054859001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698680.10.0transcription factor bHLH49-like isoform X1
RefseqXP_013698683.10.0transcription factor bHLH49-like isoform X1
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A078H9S20.0A0A078H9S2_BRANA; BnaC06g29840D protein
STRINGBo6g108460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]