PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00055045001

Common Name

GSBRNA2T00055045001, LOC106385361, LOC106390990

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 384aa MW: 43779.9 Da PI: 6.4663

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00055045001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.4	6.8e-27	80	174	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li+a+++++++++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ + GSBRNA2T00055045001 80 KWTDKMVKLLITAVSYIGDDSSMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPK 169 7************8888887543345556677********************************************6699999998 PP trihelix 81 yfdql 85 ++d++ GSBRNA2T00055045001 170 LLDSI 174 88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-24	78	201	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDGKLPQGVA VRGGASSYGG FDLQGPMSQH LQGLPFAMVS GQTCGHHLSE QHKGERESDD 60 DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGSRRKF AALQKKGKWK 120 SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDMLGRGT SCQVVENPKL LDSIGYLNDK 180 EKDDVRKIMS SKQLFYEEMC SYHNGNRLHL PHDFALQRSL QVALRSRDDQ HRVEDLDDED 240 HDGEGDEHDD DVDHGDCRVV GGPLKRARQS HSHSHEGVDH QGHVNSLECN KVTLALPQGG 300 AESGRSASVQ KQLIESRTLQ LEEQKLQIQV ELLELEKQRF RWERFSKKRD QELERMRMEN 360 ERMKLENDRM GLELKQRELG VEL*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDGKLPQGVA VRGGASSYGG FDLQGPMSQH LQGLPFAMVS GQTCGHHLSE QHKGERESDD  60
DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGSRRKF AALQKKGKWK  120
SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDMLGRGT SCQVVENPKL LDSIGYLNDK  180
EKDDVRKIMS SKQLFYEEMC SYHNGNRLHL PHDFALQRSL QVALRSRDDQ HRVEDLDDED  240
HDGEGDEHDD DVDHGDCRVV GGPLKRARQS HSHSHEGVDH QGHVNSLECN KVTLALPQGG  300
AESGRSASVQ KQLIESRTLQ LEEQKLQIQV ELLELEKQRF RWERFSKKRD QELERMRMEN  360
ERMKLENDRM GLELKQRELG VEL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5360	1e-141	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00055045001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045850	1e-131	AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	AY091378	1e-131	AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	CP002684	1e-131	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F16F4	1e-131	AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600485.1	0.0	PREDICTED: uncharacterized protein LOC106307934
Refseq	XP_013680749.1	0.0	uncharacterized protein LOC106385361
Refseq	XP_013687011.1	0.0	uncharacterized protein LOC106390990
TrEMBL	A0A078H855	0.0	A0A078H855_BRANA; BnaC08g19740D protein
TrEMBL	A0A0D3DQQ6	0.0	A0A0D3DQQ6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G9U7	0.0	A0A3P6G9U7_BRAOL; Uncharacterized protein
STRING	Bo8g070690.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-180	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	106385361 \| 106390990

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]