PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055245001
Common NameGSBRNA2T00055245001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 116aa    MW: 13368.5 Da    PI: 11.2698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055245001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-202071156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f t eeAa a+++a++kl+g+
  GSBRNA2T00055245001 20 CRYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATSEEAAMAYDEAALKLYGH 71
                         78*****999.**********965...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-152071IPR001471AP2/ERF domain
CDDcd000181.06E-282080No hitNo description
SMARTSM003804.5E-372184IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-222179IPR016177DNA-binding domain
PROSITE profilePS5103223.2092178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-312179IPR001471AP2/ERF domain
PRINTSPR003671.4E-102233IPR001471AP2/ERF domain
PRINTSPR003671.4E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MKQWKKGPAR GKGGPQNALC RYRGVRQRTW GKWVAEIREP KKRTRLWLGS FATSEEAAMA  60
YDEAALKLYG HDAYLNLPHL QQRKQGPPVN NTQRFKWSSH YPAKKKRTSI SILFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-182278360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-182278663ATERF1
3gcc_A3e-182278663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055245001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894691e-103AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589356.13e-67PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX58e-58DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A078H5D25e-80A0A078H5D2_BRANA; BnaCnng07330D protein
STRINGBo6g073020.14e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-60ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]