PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00055763001

Common Name

GSBRNA2T00055763001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 165aa MW: 19801 Da PI: 7.0044

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00055763001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.6	3.1e-09	61	116	4	59
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr rr+ +NRe+ArrsR RK+++i e + v++L++ N L +++ +l + ++ GSBRNA2T00055763001 61 EKRLRRMVSNRESARRSRMRKRKQIREKKMHVEQLTTSNYNLYNKVISLLERTPQI 116 59*************************************99998877776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0021	58	122	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.0E-8	59	109	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-7	59	111	No hit	No description
PROSITE profile	PS50217	10.059	60	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-8	62	111	No hit	No description
CDD	cd14702	3.36E-12	63	113	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MEAEDQHPSH YFNLYEGDSS QNDHFNLQNP QNDHDHDHDQ DLHVHDHCTH PQASSVVIDQ 60 EKRLRRMVSN RESARRSRMR KRKQIREKKM HVEQLTTSNY NLYNKVISLL ERTPQILHEN 120 SQLEEKLSYF HQYFMEDRMV LPGNNIDCDI TRQYLRFCIN QLGK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	MRKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00055763001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	0.0	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522314.1	3e-33	PREDICTED: basic leucine zipper 43
TrEMBL	A0A078JN80	1e-118	A0A078JN80_BRANA; BnaUnng01680D protein
STRING	Bra005971.1-P	8e-98	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17031	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08141.1	4e-16	basic leucine-zipper 75

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]