PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055802001
Common NameGSBRNA2T00055802001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 290aa    MW: 32902.4 Da    PI: 10.1225
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055802001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.3e-24655251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +++++s + +++s+R+++i+KKA+ELS+LC++ v+vi+++++g+l+++++
  GSBRNA2T00055802001  6 SSSSNSLAATSLSNRLKTIFKKASELSILCQVAVSVIYYGPNGELKTWPK 55
                         78999*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0011456IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.541557IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-141580IPR002100Transcription factor, MADS-box
PfamPF003192.2E-131553IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRASSSSSSN SLAATSLSNR LKTIFKKASE LSILCQVAVS VIYYGPNGEL KTWPKEKEVV  60
KDMALRYKAA TKRKKSSNLR TLSTMEERIR VLEAKKQKNT NLVHQNLTQQ RHHQHQTVQP  120
LNPSQYSLYL FNRDDATLSQ LPLSASHSKQ LISYQNQLRM QQQRLYDPCV SNTQGHPALL  180
TVQESWLKNQ LMQQQEPYGS HHNMRTMNNT TNSKVLGHPC PLNTIPKEFS FDLQKNPNDD  240
MVGRPKFSQD FPNLCLAYAD SPQLQTSSLP SIHQTIPNIN LIPDNSRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17297RKKSSNLRTLSTMEERIRVLEAKKQK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055802001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674541.10.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL02e-40AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078H8Y60.0A0A078H8Y6_BRANA; BnaC02g43730D protein
STRINGBo00615s090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.13e-71AGAMOUS-like 78
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]