PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00056021001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

VOZ

Protein Properties

Length: 476aa MW: 53230.7 Da PI: 5.3955

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00056021001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	439.8	3.6e-135	197	414	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspw GSBRNA2T00056021001 197 PPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 286 89************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+elfdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m+efgglkrsyymdpqp+++fewhlyeyein++da+ GSBRNA2T00056021001 287 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMNEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDAC 376 ************************************************************************************** PP VOZ 181 alyrlelkl.vdekksakgkvskdsladlqkklgrlta 217 alyrlelkl vd+kk++kgkvs+ds+adlqk++grlta GSBRNA2T00056021001 377 ALYRLELKLvVDGKKNSKGKVSTDSVADLQKQMGRLTA 414 ****7369**********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MTGKRSKITC RSTSHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR 60 EWKSELNEPS PASSLQQEQG GTLGSFSTDI CRLLQLCDEE DDATSKLAPP KPEPTTDQNL 120 EAGKAAVFQR GYNLVQEKSE NEFPLADHGN NFDGTAHLDY NQYDLQQEFE PNFNGGFNEC 180 PTYGPLHISA FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP 240 GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE LFDLTVLESE 300 TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MNEFGGLKRS YYMDPQPLHH 360 FEWHLYEYEI NKCDACALYR LELKLVVDGK KNSKGKVSTD SVADLQKQMG RLTAEFPQEN 420 VNNKRCIKGR PKVNTKVAAT TTGNVQNTVV EQGNEYGVGE EFNYLVGNLT DYYLP*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MTGKRSKITC RSTSHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR  60
EWKSELNEPS PASSLQQEQG GTLGSFSTDI CRLLQLCDEE DDATSKLAPP KPEPTTDQNL  120
EAGKAAVFQR GYNLVQEKSE NEFPLADHGN NFDGTAHLDY NQYDLQQEFE PNFNGGFNEC  180
PTYGPLHISA FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP  240
GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE LFDLTVLESE  300
TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MNEFGGLKRS YYMDPQPLHH  360
FEWHLYEYEI NKCDACALYR LELKLVVDGK KNSKGKVSTD SVADLQKQMG RLTAEFPQEN  420
VNNKRCIKGR PKVNTKVAAT TTGNVQNTVV EQGNEYGVGE EFNYLVGNLT DYYLP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.23152	1e-169	root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00056021001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125256	0.0	AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds.
GenBank	AK227014	0.0	AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22.
GenBank	AK317006	0.0	AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16.
GenBank	BT020261	0.0	BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113648.1	0.0	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_009113649.1	0.0	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_013718343.1	0.0	transcription factor VOZ1-like isoform X1
Refseq	XP_013718344.1	0.0	transcription factor VOZ1-like isoform X1
Refseq	XP_013718347.1	0.0	transcription factor VOZ1-like isoform X1
Refseq	XP_013718348.1	0.0	transcription factor VOZ1-like isoform X1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	M4EVT0	0.0	M4EVT0_BRARP; Uncharacterized protein
STRING	Bra032913.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]