PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056083001
Common NameGSBRNA2T00056083001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 176aa    MW: 21151.4 Da    PI: 9.8137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056083001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.31.6e-1151448128
                  NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                           P ++e v +yLk  +++++   ++++++ d+y v+P++  + +++    ++  y F++r k++    ++    +sg W+  g+d+ ++s
  GSBRNA2T00056083001   5 YPPEDETVGYYLKMMLDKRNKWPSNFLRSEDVYCVNPRTHFN-TQEpliLHDGRYLFVNRTKSSG---KT-DGCDSGCWRIMGRDRLIKS 89 
                          5888999*********9999666689***********98742.22222255688****9988654...33.34579*************9 PP

                  NAM  95 k.kgelvglkktLvfy....................kgrapkgektdWvmheyrl 128
                          + ++e  g kk++ f                     k++++   k  Wvm+eyrl
  GSBRNA2T00056083001  90 EkSEEILGFKKVFRFCekneekpksffkfswekaeeKEKRRARDKRVWVMEEYRL 144
                          8556669*********7777777666666666554324444456899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.8031160IPR003441NAC domain
PfamPF023652.3E-95144IPR003441NAC domain
SuperFamilySSF1019414.97E-235158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MTMIYPPEDE TVGYYLKMML DKRNKWPSNF LRSEDVYCVN PRTHFNTQEP LILHDGRYLF  60
VNRTKSSGKT DGCDSGCWRI MGRDRLIKSE KSEEILGFKK VFRFCEKNEE KPKSFFKFSW  120
EKAEEKEKRR ARDKRVWVME EYRLASKWKQ DYVICKIRLL NPNPLEFMLS NHVRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056083001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624280.11e-126PREDICTED: uncharacterized protein LOC106330344
RefseqXP_013630765.11e-126PREDICTED: uncharacterized protein LOC106336473
TrEMBLA0A078H6D51e-127A0A078H6D5_BRANA; BnaC01g28650D protein
STRINGBo1g093090.11e-126(Brassica oleracea)
STRINGBo3g081220.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.12e-67NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]