PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00056180001

Common Name

GSBRNA2T00056180001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 178aa MW: 19642.7 Da PI: 5.021

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00056180001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	35.5	3.5e-11	53	153	44	112
TCP 44 dsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............................................. 88 d++ti+WLlq a+p+i++ tg+++++as+ +s+ ++++++ g GSBRNA2T00056180001 53 DGETIQWLLQHAEPSIIASTGSGTIPASAL---ASVANHHHHQGGslttglmishelrvvvglvvvdqigeleaekegeeekllgqiyqi 139 89*************************777...333333333333466778888888888888888888888888888776666555433 PP TCP 89 kaaksaakskksqksaasalnlak 112 +q s+a+ + l++ GSBRNA2T00056180001 140 Y----------QQMSQAQGRVLHH 153 1..........2222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.5E-7	53	163	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MTTFFFIVSY SISRSGPVRP HTNRQQEPNF LNPPPQPQRH QETAEIKDFE IVDGETIQWL 60 LQHAEPSIIA STGSGTIPAS ALASVANHHH HQGGSLTTGL MISHELRVVV GLVVVDQIGE 120 LEAEKEGEEE KLLGQIYQIY QQMSQAQGRV LHHSLNPSHE EHQQESDEKD DSQGSGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00056180001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013710164.1	1e-16	transcription factor TCP20-like
Refseq	XP_013710165.1	1e-16	transcription factor TCP20-like
TrEMBL	A0A078H6J2	1e-125	A0A078H6J2_BRANA; BnaA02g28500D protein
STRING	Bra032973.1-P	1e-113	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-18	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]