PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056298001
Common NameGSBRNA2T00056298001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 402aa    MW: 44188.2 Da    PI: 10.1898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056298001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY331.2e-10264284222
                          --SS-EEEEEEE--TT-SS-E CS
                 WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                          +D+y+WrKYGqK++kgs++pr
  GSBRNA2T00056298001 264 SDEYSWRKYGQKPIKGSPHPR 284
                          69******************9 PP
2WRKY46.57.4e-153473842359
                          EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  GSBRNA2T00056298001 347 GYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 384
                          7*****988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-15229261IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-28251283IPR003657WRKY domain
PROSITE profilePS5081120.989258386IPR003657WRKY domain
SuperFamilySSF1182907.45E-8261285IPR003657WRKY domain
SMARTSM007743.0E-27263385IPR003657WRKY domain
PfamPF031067.2E-7265285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-28346384IPR003657WRKY domain
PfamPF031066.5E-12347383IPR003657WRKY domain
SuperFamilySSF1182902.35E-11347384IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAVELMRNSY GGVRVKGEDD GGFSANMEDT ALREAASAGI HGVKEFLKLI NQKSQPTEEI  60
TAVTDVAVNS FKKVISLLGR SRTGHARFRR APVTTKTKEG GDWKTEEKPA TSAVVLNRQK  120
TEQNGGSAFR VYCPTPIHRR PPLSHNNSLI TKNGSSSSAN NGRPQEPSTI NFAPSPPVSG  180
ANSFMSSHRC DTESNQMSSG FEFTNPSSQI SGSIGKPPLS SVSLKRRCDS SPSSRCHCTK  240
KRKSRVKRVI RVPAVSSKMA DIPSDEYSWR KYGQKPIKGS PHPRLVLISF ISENNATCVY  300
CQIFFSILVV PNVSSSSSGF RTLFDLFIYL QSFKIHETEL SQLVLLGYYK CSSVRGCPAR  360
KHVERALDDA MMLIVTYEGD HNHALCQTDR HNPVMRALKL A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224242KRRCDSSPSSRCHCTKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056298001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5028420.0FJ502842.1 Brassica rapa subsp. pekinensis WRKY7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137844.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-135WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A078H9U60.0A0A078H9U6_BRANA; BnaA01g13720D protein
STRINGBo1g037740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-126WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]