PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00056334001

Common Name

GSBRNA2T00056334001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 226aa MW: 24305.1 Da PI: 8.2883

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00056334001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.6	7.1e-34	47	102	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +kvrY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgCHRnFHR+e+e GSBRNA2T00056334001 47 SKVRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGCHRNFHRKETE 102 589************************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.3E-30	49	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-26	49	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.1E-29	50	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.418	51	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.3E-32	149	224	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.06E-20	150	223	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-27	163	219	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MNFEEQEEEM EMSGANPTGG YDSLSGEGAT SSGGGGGGGS RKTVGGSKVR YRECLKNHAV 60 NIGGHAVDGC CEFMPSGEDG SLDALKCAAC GCHRNFHRKE TEVMSGRAHR VPTYYNRPPQ 120 LPPPGYLHLT SPAAAGQPYK PPAASGDEED TSNPSSSGGT RAKRFRTKFT AEQKDKMLAF 180 AERLGWRIQK HDDAAVEQFC AETGVRRQVL KIWMHNNKNS LGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-36	162	220	17	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16842	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00056334001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353261	0.0	AK353261.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-I06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138327.1	1e-167	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	Q9SB61	1e-120	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A078H9X0	1e-168	A0A078H9X0_BRANA; BnaA01g14020D protein
TrEMBL	A0A398ALY7	1e-168	A0A398ALY7_BRACM; Uncharacterized protein
STRING	Bra013822.1-P	1e-167	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-112	homeobox protein 22

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]