PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056359001
Common NameGSBRNA2T00056359001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 570aa    MW: 64841.4 Da    PI: 7.8061
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056359001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57388.58.1e-28453541297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                           fqr+wseeDei+lLqG++d+k++ g +p++ + +a+y+ +k +is+ v++ q+++Kir LKkKfkk+++k         sk+++qk f+
  GSBRNA2T00056359001 453 CFQRIWSEEDEIALLQGIVDYKETSGLDPFNgERKALYDLLKPHISVSVTSVQFFQKIRTLKKKFKKEKNK--------GSKPNNQKLFH 534
                          59*****************************9**********************************99999........688999***** PP

               DUF573  91 lskkiWg 97 
                          lsk iWg
  GSBRNA2T00056359001 535 LSKLIWG 541
                          ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004632.1E-291534IPR002401Cytochrome P450, E-class, group I
SuperFamilySSF482644.32E-9617408IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.107.0E-9718414IPR001128Cytochrome P450
PfamPF000674.2E-6718355IPR001128Cytochrome P450
PRINTSPR004632.1E-293960IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.1E-29133151IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.1E-29230247IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.1E-29250276IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.1E-29293311IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.1E-29334358IPR002401Cytochrome P450, E-class, group I
PfamPF045041.5E-22454541IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MIMWYIIVAV VILASLLYGP LMSLKFGNVP TVVASSPETV KDVLKTFDAD CCSRPYLTYA  60
ARISYNLNDL AFSPYSKYWR EVRRMTVLEL YTAKRVQSFR HIREEEVASL VEFVKGAALL  120
GNTVNLSNTL MKLSGSVICR VGFGINLKGS KLEDTYEEII RETMEVLGSF AAADYLPIIG  180
RIIDRVTGLH SKCEKQHMED ESLKDDIIAL LLKMERGEAG LGEYQLTRNH TKGILLNVLI  240
AGIDTSGHTI TWAMTHMIKN PRVLKKVQAE VREVIQNKDN ITEEDIEQLE YLKMVIKETV  300
RINPLVPLLI PREASKDIKI AGYDIPKKTW IHVNIWGVHR NPNVWNDPET FIPERRMCPG  360
MGMCMALAHL TLINLLYRFD WKLPVGMEIE DVDLEESYGL VCPKKVLLQL VPIPVASLEL  420
LLTSDLHVET DEGEKAKSVK RASVSDGETK ANCFQRIWSE EDEIALLQGI VDYKETSGLD  480
PFNGERKALY DLLKPHISVS VTSVQFFQKI RTLKKKFKKE KNKGSKPNNQ KLFHLSKLIW  540
GDEEISYAEK DELKTGEGRK RSVFQLWRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A3e-561841359492Ferruginol synthase
5ym3_A3e-561841359492Ferruginol synthase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056359001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111654.10.0PREDICTED: cytochrome P450 71B13-like isoform X1
SwissprotP580510.0C71BE_ARATH; Cytochrome P450 71B14
TrEMBLA0A078H6X20.0A0A078H6X2_BRANA; BnaA01g14230D protein
TrEMBLA0A3P5ZQJ40.0A0A3P5ZQJ4_BRACM; Uncharacterized protein
STRINGBra013842.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.19e-14DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]