PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00056495001

Common Name

GSBRNA2T00056495001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 476aa MW: 51959.4 Da PI: 6.4545

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00056495001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7.3e-29	69	122	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ GSBRNA2T00056495001 69 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 122 79*****************.******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.323	66	125	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-20	67	126	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-30	68	127	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	69	122	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-9	71	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
QHVVRKKRNE WNVSEHSGSV EETGQREDGD NNSSSANNEG SWRSSRKRKE EEVDEQGGDD 60 KEDTSSLKKP RVVWSVELHQ QFVAAVNQLG VDKAVPKKIL EMMNVPGLTR ENVASHLQKY 120 RIYLRRLGGV SQHQGNMNHS FMTGQDPSFG PLSTLNGFDL QALAAAGQLP AQSLAQLQAA 180 GLARPPSLSK PGMSVDQRSI FSFENPKIRH GQMMNSGGGG NKQMNLLHGV PMGMEPRQFA 240 GGGQMRNVQS SGMMMPVGGG PSMLQQQQVM LSSSVPRRSE TSSGSRVLPA AATTQSVVFN 300 NFSSELPRNS FPLANAPGIS VSYQEEVNSS DAKGGAGFGN PSYDIFNDYP QQYNNNNDWD 360 LQNIGMVFNS HQDTTASAAF SSSSSTQRTR AEHVQNHHQQ QQFPSQSLNH MNGGGSVRVK 420 SERVAETVTC PPATTLFQEQ YNQEDLMSAL LKQEGLPLVD NEFDFDGYSL DNIPV*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

QHVVRKKRNE WNVSEHSGSV EETGQREDGD NNSSSANNEG SWRSSRKRKE EEVDEQGGDD  60
KEDTSSLKKP RVVWSVELHQ QFVAAVNQLG VDKAVPKKIL EMMNVPGLTR ENVASHLQKY  120
RIYLRRLGGV SQHQGNMNHS FMTGQDPSFG PLSTLNGFDL QALAAAGQLP AQSLAQLQAA  180
GLARPPSLSK PGMSVDQRSI FSFENPKIRH GQMMNSGGGG NKQMNLLHGV PMGMEPRQFA  240
GGGQMRNVQS SGMMMPVGGG PSMLQQQQVM LSSSVPRRSE TSSGSRVLPA AATTQSVVFN  300
NFSSELPRNS FPLANAPGIS VSYQEEVNSS DAKGGAGFGN PSYDIFNDYP QQYNNNNDWD  360
LQNIGMVFNS HQDTTASAAF SSSSSTQRTR AEHVQNHHQQ QQFPSQSLNH MNGGGSVRVK  420
SERVAETVTC PPATTLFQEQ YNQEDLMSAL LKQEGLPLVD NEFDFDGYSL DNIPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-22	65	127	1	63	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21630	1e-141	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:15173562, ECO:0000269\|PubMed:9891419}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:15282545, ECO:0000269\|PubMed:16407152}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00056495001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601580.1	0.0	PREDICTED: two-component response regulator ARR2-like
Swissprot	Q9ZWJ9	0.0	ARR2_ARATH; Two-component response regulator ARR2
TrEMBL	A0A078HCB2	0.0	A0A078HCB2_BRANA; BnaC01g22100D protein (Fragment)
STRING	Bo1g055180.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2403	27	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-175	response regulator 2

Publications ? help Back to Top
Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Takahashi N,Umeda M Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Arnaud D, et al. Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Takatsuka H,Higaki T,Umeda M Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]